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| submission:slx_submissions [2026/07/06 13:23] – [Make the Submission] Johanna Barbieri | submission:slx_submissions [2026/08/04 15:15] (current) – [Submission Guidelines] Johanna Barbieri | ||
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| * **Index** must be the corresponding Index Name (e.g. i701_i501) rather than the index sequence. Some index types are grouped (for instance all Nextera kits as they all use the same original set of Illumina Nextera index sequence), so as long as the sequence matches your index sequence you are able to submit using that index name. | * **Index** must be the corresponding Index Name (e.g. i701_i501) rather than the index sequence. Some index types are grouped (for instance all Nextera kits as they all use the same original set of Illumina Nextera index sequence), so as long as the sequence matches your index sequence you are able to submit using that index name. | ||
| * **Species** is only needed if you have a mix of species in the pool. Use this field to assign a species for any sample whose species differs from that set in cell C25 (the species common across the pool). | * **Species** is only needed if you have a mix of species in the pool. Use this field to assign a species for any sample whose species differs from that set in cell C25 (the species common across the pool). | ||
| - | - For a pool with no indexing, inline barcodes or unspecified indexing, complete a single row for the whole pool; i.e. a pool of six libraries is still only one row in the sample information table. The index should read //"None"// for no index, //" | + | - For a pool with no indexing, inline barcodes or unspecified indexing, complete a single row for the whole pool; i.e. a pool of six libraries is still only one row in the sample information table. The index should read //"No Index"// for no index, //" |
| A full list of the supported indexes can be found on the index information page. If your index type is not currently supported, email the genomics helpdesk to enquire if the new indexes could be added. We cannot add every available index, but we will add to our list if there is a significant requirement for new indexing kits or options. | A full list of the supported indexes can be found on the index information page. If your index type is not currently supported, email the genomics helpdesk to enquire if the new indexes could be added. We cannot add every available index, but we will add to our list if there is a significant requirement for new indexing kits or options. | ||
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| * MiSeq: 15µl of your pooled library at 10-20nM. | * MiSeq: 15µl of your pooled library at 10-20nM. | ||
| * NextSeq: 15µl of your pooled library at 10-20nM. | * NextSeq: 15µl of your pooled library at 10-20nM. | ||
| - | * MiSeq Express: 15µl at 4nM precisely. | + | * MiSeq Express or NextSeq |
| * NovaSeq submissions dependent upon flowcell type: | * NovaSeq submissions dependent upon flowcell type: | ||