CRUK-CI Genomics Help

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submission:indexkits [2024/04/09 16:40] – Removed trailing strong end tag. Richard Bowerssubmission:indexkits [2024/04/25 13:33] (current) – Change source of index information to genomicsequencing Richard Bowers
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 ^ Index:      | ''Unspecified Index''   | ^ Index:      | ''Unspecified Index''   |
  
-You will need to enter the number of cycles for your indexes in the SLX submission form in the ''Index Lengths'' field. If, for example, your kit is 8bp single index, enter "8" in the field. If your kit is 6bp and 10bp dual index, enter "6+10". Don't enter "n+0" (plus zero) for single index.+You will need to enter the number of cycles for your indexes in the SLX submission form in the ''Index Lengths'' field. If, for example, your kit is 8bp single index, enter "8" in the field. If your kit is 6bp and 10bp dual index, enter "6+10". Don't enter "n+0" (plus zero) for single index.\\ 
 +In this case, demultiplexing needs to be done by the user.
  
 If your needs for indexing are not met by a supported kit, have a word with Genomics before confirming your submission. Experimental indexing will always need to be done as custom, but if you're using a new kit that is likely to go into general use we might add it to Clarity LIMS. If your needs for indexing are not met by a supported kit, have a word with Genomics before confirming your submission. Experimental indexing will always need to be done as custom, but if you're using a new kit that is likely to go into general use we might add it to Clarity LIMS.
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 ===== Supported Kits ===== ===== Supported Kits =====
  
-{{scrape>https://claritydev.cruk.cam.ac.uk/sequencing/help/IndexInformation!supported.action}}+{{scrape>https://genomicsequencing.cruk.cam.ac.uk/sequencing/help/IndexInformation!supported.action}}
  
 ===== Supported Index Type Mixes ===== ===== Supported Index Type Mixes =====
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 There are some very specific cases where index types can be mixed (i.e. barcodes from more than one kit can be combined in a pool). **This is not recommended for general use** and should only be utilised under guidance from the Genomics Core. There are some very specific cases where index types can be mixed (i.e. barcodes from more than one kit can be combined in a pool). **This is not recommended for general use** and should only be utilised under guidance from the Genomics Core.
  
-{{scrape>https://claritydev.cruk.cam.ac.uk/sequencing/help/IndexInformation!mixes.action}}+{{scrape>https://genomicsequencing.cruk.cam.ac.uk/sequencing/help/IndexInformation!mixes.action}}
  
 ===== Barcoding Kit Details ===== ===== Barcoding Kit Details =====
  
-{{scrape>https://claritydev.cruk.cam.ac.uk/sequencing/help/IndexInformation!kits.action}}+{{scrape>https://genomicsequencing.cruk.cam.ac.uk/sequencing/help/IndexInformation!kits.action}}