CRUK-CI Genomics Help

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submission:10x_xenium [2025/02/13 18:11] – [Workflow: kits, panels & post xenium options] Bioinformatics service adminsubmission:10x_xenium [2025/02/13 18:16] (current) – [Workflow: kits, panels & post xenium options] Bioinformatics service admin
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 ^Workflow ^Kit Used ^Slide used for submission ^Customization Options ^Post-Xenium Options ^ ^Workflow ^Kit Used ^Slide used for submission ^Customization Options ^Post-Xenium Options ^
 |**Xenium Prime (5K)**\\ Formalin Fixed/Paraffin embedded\\  Formalin Fixed(FFPE) fresh frozen (FF) or fixed frozen (FxF) tissue|* Xenium slides & sample prep reagents\\ * Xenium decoding consumables\\  * Xenium pre-designed gene expression panel\\   * Xenium add on custom panel\\ * Optional cell segmentation |Xenium slide with pre-printed xenium slide ID & 10.45 x22.45mm fiducial frame| *Xenium pre-designed panels (see below)\\  * Add-on custom panels (up to 100 genes)\\  * Standalone custom gene panels (up to 480 genes)\\ | * Haemotoxylin and Eosin (H&E) Staining\\ * 10X Visium\\ *Immunofluorescence (IF)| |**Xenium Prime (5K)**\\ Formalin Fixed/Paraffin embedded\\  Formalin Fixed(FFPE) fresh frozen (FF) or fixed frozen (FxF) tissue|* Xenium slides & sample prep reagents\\ * Xenium decoding consumables\\  * Xenium pre-designed gene expression panel\\   * Xenium add on custom panel\\ * Optional cell segmentation |Xenium slide with pre-printed xenium slide ID & 10.45 x22.45mm fiducial frame| *Xenium pre-designed panels (see below)\\  * Add-on custom panels (up to 100 genes)\\  * Standalone custom gene panels (up to 480 genes)\\ | * Haemotoxylin and Eosin (H&E) Staining\\ * 10X Visium\\ *Immunofluorescence (IF)|
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-10x Genomics offer multiple pre-designed panels (in packs sizes sufficient for 2 slides) detailed below:\\ [[https://www.10xgenomics.com/products/xenium-panels/| xenium panels]]\\   
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-Xenium add-on custom panels and standalone custom panels can be ordered in pack sizes suffcient for 4 or 16 slides.\\  
-Please contact the Genomics single cell team [[singlecell@cruk.cam.ac.uk|Single Cell Team]] to discuss ordering a add-on or custom panel once you have created with 10x Genomics.  
  
 ^**Pre-designed panel** ^   **Genes targeted**    ^ ^**Pre-designed panel** ^   **Genes targeted**    ^
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 These panels as well as the target within can be found here:  These panels as well as the target within can be found here: 
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 https://www.10xgenomics.com/support/software/xenium-panel-designer/latest/tutorials/pre-designed-xenium-v1 https://www.10xgenomics.com/support/software/xenium-panel-designer/latest/tutorials/pre-designed-xenium-v1
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 https://www.10xgenomics.com/support/software/xenium-panel-designer/latest/tutorials/pre-designed-xenium-prime-5k https://www.10xgenomics.com/support/software/xenium-panel-designer/latest/tutorials/pre-designed-xenium-prime-5k
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 +Xenium add-on and standalone custom panels can be ordered in pack sizes sufficient for 4 or 16 slides.\\ 
 +Please contact the Single Cell Team [[singlecell@cruk.cam.ac.uk|Single Cell Team]] to discuss ordering an add-on or custom panel once you have created it with 10x Genomics. 
 =====How to Complete the 10x Xenium Submission Form=====  =====How to Complete the 10x Xenium Submission Form===== 
 You'll find information below to help you fill out each part of the Xenium submission form which you can  You'll find information below to help you fill out each part of the Xenium submission form which you can