CRUK-CI Genomics Help

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data:sharing [2025/06/23 16:23] – Added external & FGC Richard Bowersdata:sharing [2025/07/15 16:30] (current) – Link to the main page for FGC Bioinformatics service admin
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 The mechanism for sharing data is the same for both CRUK-CI groups and external users of the sequencing service, though the implications of changing sharing will differ. We'll go through the mechanism here then discuss the implications. The mechanism for sharing data is the same for both CRUK-CI groups and external users of the sequencing service, though the implications of changing sharing will differ. We'll go through the mechanism here then discuss the implications.
  
-**IMPORTANT** Sharing is done on the **submission project** level, not at the individual pool level. You will need to take this into account when submitting your samples for library prep and sequencing by choosing a project already created for your work or creating a new one. If you have habitually submitted all your samples and pools into just one project, not caring about this organisation at all, you may have problems sharing only some of these pools.+**IMPORTANT** Sharing is done on the **submission project** level, not at the individual pool level. You will need to take this into account when submitting your samples for library prep and sequencing by choosing a project already created for your work or creating a new one. For example, if you have submitted all your samples and pools into just one project, you may have problems sharing only some of these pools.
  
 Select the tab [[https://genomicsequencing.cruk.cam.ac.uk/sequencing/sharing/Sharing.action|Data Sharing]] from the sequencing portal. The page will display a list of projects you own and also those from other members of your group. For your information it lists all the groups each project is currently shared with and the SLX pools in those projects. Select the tab [[https://genomicsequencing.cruk.cam.ac.uk/sequencing/sharing/Sharing.action|Data Sharing]] from the sequencing portal. The page will display a list of projects you own and also those from other members of your group. For your information it lists all the groups each project is currently shared with and the SLX pools in those projects.
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 {{ :data:sharingwith.png }} {{ :data:sharingwith.png }}
  
-This page will be slightly different for different users. Members of CRUK-CI will be able to share with other CRUK-CI groups and external users. External users will only be able to choose to share with CRUK-CI groups. There is a special case for the Functional Genomics Centre that we will discuss later.+This page will be slightly different for different users. Members of CRUK-CI will be able to share with other CRUK-CI groups and external users. External users will only be able to choose to share with CRUK-CI groups. There is a special case for the Functional Genomics Centre that we will discuss below.
  
 Select the group or groups you wish to share with and click "Set Sharing". The final page will confirm all the groups the project is shared with. Select the group or groups you wish to share with and click "Set Sharing". The final page will confirm all the groups the project is shared with.
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 The Functional Genomics Centre (FGC) has an extended version of the sharing mechanism of other external groups. You can choose whether or not to share the project with the other side of the collaboration, much as presented to you after submission for sequencing or library prep. Otherwise you are the same as other external parties; you may choose zero or more CRUK-CI groups for collaboration. The Functional Genomics Centre (FGC) has an extended version of the sharing mechanism of other external groups. You can choose whether or not to share the project with the other side of the collaboration, much as presented to you after submission for sequencing or library prep. Otherwise you are the same as other external parties; you may choose zero or more CRUK-CI groups for collaboration.
  
 +It is important to set the sharing with the other half of the collaboration **before the pool is sequenced**. This sharing option dictates whether the files go to only one FTP account or to both, and it is not retrospective. If you decide to share after sequencing, you will need to arrange to send the files to your collaborator by other means.
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 +For more details how sharing within the FGC works, see the support page for [[submission:collaborators:functionalgenomicscentre|Functional Genomics Centre Submissions]].